V-pipe is a workflow designed for the analysis of next generation sequencing (NGS) data from viral pathogens. It produces a number of results in a curated format (e.g., consensus sequences, SNV calls, local/global haplotypes). V-pipe is written using …

V-pipe is a computational pipeline for processing viral next-generation sequencing data and analyzing mixed virus populations. We’re thrilled to announce the release of V-pipe 3.0! V-pipe 3.0 enables sustainable viral genomic data science. You can check out the published paper on our work in GigaScience. Get the paper!

2024年9月30日 · Here, we present V-pipe 3.0, a computational pipeline designed for analyzing next-generation sequencing data of short viral genomes. It is developed to enable reproducible, scalable, adaptable, and transparent inference of genetic diversity of viral samples.

What is V-pipe? V-pipe is a bioinformatics pipeline that integrates various computational tools for the analysis of viral high-throughput sequencing data. It supports the reproducible analysis of genomic diversity in intra-host virus populations, which is …

2021年1月20日 · V-pipe supports quality control, read mapping and alignment, low-frequency mutation calling, and inference of viral haplotypes. For generating high-quality read alignments, we developed a novel method, called ngshmmalign, based on profile hidden Markov models and tailored to small and highly diverse viral genomes.

V-pipe is the bioinformatics pipeline that integrates various open-source software packages for assessing viral genetic diversity from next-generation sequencing (NGS) data derived from intra-host virus populations.

2023年10月16日 · Here, we present V-pipe 3.0, a computational pipeline designed for analyzing next-generation sequencing data of short viral genomes. It is developed to enable reproducible, scalable, adaptable, and transparent inference of genetic diversity of viral samples.

2021年7月19日 · V-pipe supports quality control, read mapping and alignment, low-frequency mutation calling, and inference of viral haplotypes. For generating high-quality read alignments, we developed a novel method, called ngshmmalign, based on profile hidden Markov models and tailored to small and highly diverse viral genomes.

2024年10月11日 · V-pipe 项目安装与使用指南. V-pipe V-pipe is a pipeline designed for analysing NGS data of short viral genomes 项目地址: https://gitcode.com/gh_mirrors/vp/V-pipe . 1. 项目目录结构及介绍. V-pipe 项目的目录结构如下：

V-pipe is part of SIB's portfolio of open software and databases. Bioinformatics pipeline for processing viral next-generation sequencing data and analyzing mixed virus populations.