This is the official development repository for samtools. The original samtools package has been split into three separate but tightly coordinated projects: htslib: C-library for handling high-throughput sequencing data; samtools: mpileup and other tools for handling SAM, BAM, CRAM; bcftools: calling and other tools for handling VCF, BCF

Samtools. Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: Samtools Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format BCFtools Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants HTSlib

Tools (written in C using htslib) for manipulating next-generation sequencing data - samtools/samtools

2009年8月15日 · SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net.

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM (Sequence Alignment/Map), BAM (Binary Alignment/Map) and CRAM formats, written by Heng Li.

Samtools is also able to open files on remote FTP or HTTP(S) servers if the file name starts with `ftp://', `http://', etc. Samtools checks the current working directory for the index file and will download the index upon absence.

Documentation for BCFtools, SAMtools, and HTSlib’s utilities is available by using man command on the command line. The manual pages for several releases are also included below — be sure to consult the documentation for the release you are using.

2024年9月12日 · Download SAM tools for free. SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format.

2024年3月25日 · We can use the Samtools tview command to visualize the genome in the command line. You can surely try samtools tview in the terminal and look for options you need in your analysis. The good...

2021年2月16日 · Background: SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, statistics, variant calling, and …