
Phyre - Google Groups
2021年12月29日 · The Phyre2 server appears to be running as per spec so it should be okay to run jobs. Many thanks are. 7 ...
How to get coil % in the predicted secondary structure of a protein
2025年2月18日 · Hi I don't know if there is a tool that will do that for you. Coiled coils are made up of alpha helices, but not all alpha helices are in coils - so you have an upper limit to the percentage of coils (i.e. the percentage of helices). I think you would need to identify which residues are in coils visually (probably using a molecular graphics viewer like QTMG
Pocket Detection using Fpocket2 at Phyre2 - Google Groups
2021年9月3日 · All groups and messages ... ...
Phyre2 unavailable 1st - 4th December 2023 - Google Groups
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Phyre2.2 One 2 One Threading Problem - Google Groups
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Use custom pdb database and integration of AlphaFold db
2021年8月31日 · I work on very divergent protein without entries in the PDB and I was wondering if I could use Phyre2 on custom pdb structures (obtained from modelling or ab initio predictions) ? Moreover, I was wondering if you would consider adding the AlphaFold db to the PDB to enrich the number of structures available for comparison using Phyre2...
Phyre2 intensive result/pdb file - Google Groups
2022年10月3日 · All groups and messages ... ...
Phyre2 server nodes rebooting - how to avoid - Google Groups
2021年5月20日 · All groups and messages ... ...
Occasional Phyre2 jobs failing - Google Groups
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Problem regarding protein modelling and interactions - Google …
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