HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes. HADDOCK distinguishes itself …

This tutorial will demonstrate the use of HADDOCK for modelling the 3D structure of a protein-protein complex from pairwise interfacial residue distances derived from multiple structural …

HADDOCK2.4 basic protein-protein docking tutorial: A tutorial demonstrating the use of the HADDOCK web server to model a protein-protein complex using interface information

This tutorial will demonstrate the use of HADDOCK for the modelling of protein-small molecule complexes. We will make use of a recently developed protocol whose key element is the use …

A protein-ligand docking example making use of the knowledge of a template ligand (a ligand similar to the ligand we want to dock and bind to the same receptor). The template ligand …

2019年12月30日 · Our approach for these targets boils down to variations of our protein-peptide protocol 16 or threading on available templates and refining.

Protein-protein and protein-DNA/RNA docking based on a hybrid algorithm of template-based modeling and ab initio free docking. Specify the residues of the binding site. Yan Y, Tao H, He …

2021年9月9日 · Here, we present a new protocol in HADDOCK (High Ambiguity Driven DOCKing), our integrative modeling platform, which incorporates homology information for …

2020年4月8日 · The HDOCK server (http://hdock.phys.hust.edu.cn/) is a highly integrated suite of homology search, template-based modeling, structure prediction, macromolecular docking, …

2021年7月8日 · HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/) [1] is used for protein-protein docking and their modeling. Not only proteins, but it can also process …