SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics are reported for …

Jan 13, 2023 · SAMStat is an efficient program to extract quality control metrics from fastq and SAM/BAM files. A distinguishing feature is that it displays sequence composition, base quality …

Sep 24, 2015 · $ tar -xzvf samstat-1.5.tar.gz. $ export PATH=/home/user/samtools-1.2/bin:$PATH. $ cd samstat-1.5/ $ ./configure $ make. $ export PATH=/home/user/samstat …

这个软件是对我们的比对结果（通常是bwa,bowtie,tophat,hisat,star）bam或者sam来进行一个可视化的总结，类似于fastqc对我们的fastq测序结果做一个可视化总结，非常好用。 一．下载并安 …

Mar 7, 2018 · 命令如下： samstat P_jmzeng.final.REF_*bam 默认对每一个输入的bam文件，都是会输出一个网页版的统计QC报告的，上面的命令会把所有染色体的bam文件都输入，但事实 …

Aug 12, 2022 · SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistics …

Jun 28, 2021 · SAMStat 1.5.1 :: DESCRIPTION SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects.

Jan 1, 2011 · SAMStat is ideally suited to deal with the ever increasing amounts of data from second-and third-generation sequencing projects. Specific applications include the verification …

Jul 14, 2021 · 命令如下： samstat P_jmzeng.final.REF_*bam 默认对每一个输入的bam文件，都是会输出一个网页版的统计QC报告的，上面的命令会把所有染色体的bam文件都输入，但事实 …

Jan 1, 2011 · To understand the relationship between potential protocol biases and poor mapping we wrote SAMstat, a simple C program plotting nucleotide overrepresentation and other …