2019年11月14日 · rast(使用子系统技术的快速注释)是用于注释完整或几乎完整的组装的原核基因组以及完整噬菌体或质粒的一个工具，但它不能分析真核，小片段的基因组...

The RAST (Rapid Annotation using Subsystem Technology) Server provides high quality genome annotations for prokaryotes across the whole phylogenetic tree. It makes a SEED-quality annotation available as a service with a 48 hour turnaround time.

RAST is a web-based environment that allows users to upload a genome, annotate the genome, edit the annotations and compare the genome with other sequenced genomes in the SEED database. Since the initial publication of The RAST Server: rapid annotations using subsystems technology in 2008, over 150,000 requests for genome annotations have been ...

The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for...

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2020年9月14日 · 02. 在线注释工具 rast 03. 注释工具 PGAAP 04. SNP注释工具 snpEFF 05. COG注释 第四章 基因组比较 第四章 基因组比较 01. mummer 02. nucdiff 03. mauve 04. sibelia 05. ani 10. bigsi 第五章 泛基因组分析 第五章 泛基因组分析 01. Pangenome 概述 02.

2015年2月10日 · In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for identifying and annotating genomic features as well as the ability to add custom features to an annotation job.

With RAST, it is now possible to get a fairly accurate annotation of a prokaryotic genome in about a day. We believe that the result is often very close to what most annotation groups can produce spending months or even man-years.

Besides producing initial assignments of gene function and a metabolic reconstruction, the RAST server provides an environment for browsing the annotated genome and comparing it to the hundreds of genomes maintained within the SEED integration.

As demand for ever more accurate annotations and the number of newly-sequenced genomes increases, there is a growing demand for “the next generation” of the RAST technology (RASTtk). This new version of the architecture makes it possible to construct custom pipelines, integrate new bioinformatic tools, and make the developed pipelines ...