This Pizza.py tool wraps the original RasMol program, not Protein Explorer. The rasmol constructor takes a pdbfile object as its argument which produces PDB files that RasMol reads …

It includes Python wrappers that drive the Raster3d and RasMol packages listed above. It also includes tools that convert LAMMPS output into input files readable by VMD and AtomEye. …

Pizza.py 可以将 LAMMPS 转储文件直接管理到 Raster3d 和 RasMol 可视化程序中。 LAMMPS 可以通过“dump xyz”命令直接创建 XYZ 文件，这是许多可视化程序（包括 VMD ）使用的简单 …

Pizza.py is a loosely integrated collection of tools written in Python, many of which provide pre- and post-processing capability for the LAMMPS molecular dynamics package. There are tools …

lammps是一个经典的分子动力学代码，可以模拟液体中的粒子，固体和汽体的系综。也可以采用不同的力场和边界条件来模拟全原子，聚合物，生物，金属，粒状和粗料化体系。lammps可 …

Help on the syntax for invoking a tool and using its methods and settings can be accessed interactively within Pizza.py itself by typing "? tool" or "?? tool". Typing "??" gives a one-line …

2022年1月16日 · 命令在论坛里面或者手册里面都有，主要针对从没有接触过计算机仿真的手把手的小白，对于有计算机基础的确实不算保姆级，仅个人意见，我当初对于这些全是自己摸索， …

2020年3月3日 · Specifically, Pizza.py can convert LAMMPS dump files into PDB, XYZ, Ensight, and VTK formats. Pizza.py can pipe LAMMPS dump files directly into the Raster3d and …

2017年8月31日 · LAMMPS是一个经典的分子动力学代码，可以模拟液体中的粒子，固体和汽体的系综。 也可以采用不同的力场和边界条件来模拟全原子，聚合物，生物，金属，粒状和粗料 …

Pizza.py is a loosely integrated collection of tools written in Python, many of which provide pre- and post-processing capability for the LAMMPS molecular dynamics package. - …