lefser is the R implementation of the popular microbiome biomarker discovery too, LEfSe. It uses the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis to find …

2025年2月20日 · lefser is the R implementation of the Linear discriminant analysis (LDA) Effect Size , a Python package for metagenomic biomarker discovery and explanation. (Huttenhower …

2024年5月29日 · LEfSe软件用于发现两组或两组以上的biomarker，主要是通过非参数因子Kruskal-Wallis秩和检验来实现的。运行LEfSe软件主要分三大步骤：第一步：需要把普通的物 …

lefser is the R implementation of the Python package, Linear discriminant analysis (LDA) Effect Size . LEfSe is the most widely used Python package and Galaxy module for metagenomic …

2024年10月11日 · Package ‘lefser’ March 31, 2025 Type Package Title R implementation of the LEfSE method for microbiome biomarker discovery Description lefser is the R implementation …

lefser is the R implementation of the Python package, Linear discriminant analysis (LDA) Effect Size . LEfSe is the most widely used Python package and Galaxy module for metagenomic …

lefser identifies biomarkers between two primary conditions (classes) and optional sub-conditions (subclasses) from the relative abundances of features (e.g. microbial taxa) across samples.

2024年11月28日 · We present the lefser package to provide comparable functionality within the R/Bioconductor ecosystem of statistical analysis tools, with improvements to the original …

lefser.Rd Perform a LEfSe analysis: the function carries out differential analysis between two sample classes for multiple features and uses linear discriminant analysis to establish their …

2020年11月8日 · View source: R/lefser.R Description Perform a LEfSe analysis: the function carries out differential analysis between two sample groups for multiple microorganisms and …