2023年6月26日 · @article{ji2021dnabert, author = {Ji, Yanrong and Zhou, Zhihan and Liu, Han and Davuluri, Ramana V}, title = "{DNABERT: pre-trained Bidirectional Encoder …

2024年2月14日 · We publish DNABERT-S, a foundation model based on DNABERT-2 specifically designed for generating DNA embedding that naturally clusters and segregates genome of …

DNABERT-S is a foundation model based on DNABERT-2 specifically designed for generating DNA embedding that naturally clusters and segregates genome of different species in the …

This repository includes the implementation of 'DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome'. Please cite our …

DNA (16S gene) Classification with DistilBERT. Contribute to shaharazulay/dna-bert development by creating an account on GitHub.

In this study, we present a novel technique namely BERT-DNA by incorporating BERT-base multilingual model in bioinformatics to interpret the information of DNA sequences. We treated …

2024年2月14日 · We publish DNABERT-S, a foundation model based on DNABERT-2 specifically designed for generating DNA embedding that naturally clusters and segregates genome of …

DNA data: Reshaping Human genome (DNA) into HF dataset, there is also a version with stride 1; Custom tokenizer: finding a way to create KMER tokenizer for K>6; DNA data configurable: …

This project aims to classify the DNA sequences of six different pathogens including COVID-19. I compare the performance of Transformer networks and a simple Convolutional Neural …

2021年1月17日 · I was wondering if I can retrieve the embedding from DNA sequences that I would train and use them later then for down stream tasks. Can you please confirm that with …