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2025年3月11日 · Once you are in an active python>=3.11,<3.14 environment, you can run: If you use BraiAn in your work, please cite the paper below, currently in pre-print: Chiaruttini, N., Castoldi, C. et al. ABBA, a novel tool for whole-brain mapping, reveals brain-wide differences in immediate early genes induction following learning. bioRxiv (2024).

Braian Ezequiel Toledo [2] (8 September 1993 – 26 February 2020) [3] [4] [5] was an Argentine javelin thrower who improved the World Youth Best in boys' javelin throw by more than six metres. [6] [note 1]

QuPath BraiAn extension Extends QuPath's functionalities for image analysis of serial brain sections across many animals. It is designed for multichannel cell segmentation across large and variable datasets and ensures consistency in image analysis across large datasets.

2024年9月6日 · BraiAn - A python library for easy navigation, visualisation, and analysis of whole-brain quantification data.

BraiAn is a collection of two toolkits for whole-brain quantitative analysis of histological data from large datasets. We designed it for the analysis of whole-brain data derived from serial 2D sections previously aligned to a 3D reference atlas (for example using ABBA).

BraiAn for QuPath. The first module of BraiAn, also known as BraiAnDetect, consists of a QuPath extension for image analysis of serial brain sections across many animals. It is designed for multichannel cell segmentation across large and variable datasets and ensures consistency in image analysis across large datasets.

BraiAn - A python library for easy navigation, visualisation, and analysis of whole-brain quantification data.

braian: intended for importing brain data from different sources (e.g. QuPath) and checking data integrity against a brain atlas ontology. It can also prepare the data in cohorts/groups and experiments; braian.plot: intended for brain data visualisation, in an interactive intuitive manner.